# Created by: Johann Visagie <wjv@FreeBSD.org>
# $FreeBSD: biology/migrate/Makefile 327709 2013-09-20 15:55:44Z bapt $

PORTNAME=	migrate
PORTVERSION=	3.5.1
CATEGORIES=	biology
MASTER_SITES=	http://popgen.sc.fsu.edu/currentversions/
DISTNAME=	${PORTNAME}-${PORTVERSION}.src

MAINTAINER=	wen@FreeBSD.org
COMMENT=	Program to estimate population sizes and migration rates

WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}/src

GNU_CONFIGURE=	yes
CONFIGURE_ENV=	ac_cv_prog_GMAKE="${MAKE}"
MAKE_ARGS=	PRETTYCFLAGS="${CFLAGS} -DNOJPEG -DNOZLIB -DNOPNG -Iharu -DPRETTY -lstdc++"

MAN1=		${PORTNAME}.1
MLINKS=		${PORTNAME}.1 ${PORTNAME}-n.1
PORTDOCS=	*
PORTEXAMPLES=	*
PLIST_FILES=	bin/${PORTNAME} bin/${PORTNAME}-n

NO_STAGE=	yes
.include <bsd.port.options.mk>

NOT_FOR_ARCHS=	alpha
ONLY_FOR_ARCHS_REASON=	Does not compile

.if defined(WITH_THREAD_PRETTY)
ALL_TARGET=	thread-pretty
.elif defined(WITH_PRETTY)
ALL_TARGET=	pretty
.elif defined(WITH_THREAD)
ALL_TARGET=	thread
.else
ALL_TARGET=	all
.endif

post-patch:
	@${REINPLACE_CMD} -e 's|="-O "|="$$CFLAGS"|g ; \
		 s|-lpthread|${PTHREAD_LIBS}|g' ${WRKSRC}/configure
	@${REINPLACE_CMD} -e '/PRETTY$$/d' ${WRKSRC}/definitions.h
	@${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/haru/makefile.gcc

do-install:
	${INSTALL_PROGRAM} ${WRKSRC}/${PORTNAME}-n ${PREFIX}/bin
	${LN} -sf ${PORTNAME}-n ${PREFIX}/bin/${PORTNAME}
	${INSTALL_MAN} ${WRKSRC}/${PORTNAME}.1 ${MAN1PREFIX}/man/man1
.if ${PORT_OPTIONS:MDOCS}
	@${MKDIR} ${DOCSDIR}
.for i in HISTORY README README_PARALLEL_GENERAL ${PORTNAME}.html
	${INSTALL_DATA} ${WRKSRC}/../${i} ${DOCSDIR}
.endfor
	@${MKDIR} ${DOCSDIR}/graphics
	${INSTALL_DATA} ${WRKSRC}/../graphics/* ${DOCSDIR}/graphics
.endif
.if ${PORT_OPTIONS:MEXAMPLES}
	@${MKDIR} ${EXAMPLESDIR}
	${INSTALL_DATA} ${WRKSRC}/../example/[A-Za-z]* ${EXAMPLESDIR}
.endif

.include <bsd.port.mk>